PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf08724g06011.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family TCP
Protein Properties Length: 398aa    MW: 43596.8 Da    PI: 7.3562
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf08724g06011.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP127.61.3e-39782432124
                       TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasns 85 
                               ++k+++++++hTkv+gR+RR+R++a+caar+F+L++eLG+++d++tieWLlqqa+p+++++tgt++++a+++  + s +ss+s+ 
  Niben101Scf08724g06011.1  78 PPKRTSTKDRHTKVDGRGRRIRMPALCAARVFQLTRELGHKSDGETIEWLLQQAEPSVIAATGTGTIPANFTsLNISLRSSGSSM 162
                               789******************************************************************9998777777777755 PP

                       TCP  86 ssg...........................................kaaksaakskksqksaasalnlakesrakararare 124
                               s +                                           + + ++ + + +q+   + l+l + s +++ +r+r 
  Niben101Scf08724g06011.1 163 SVPsqlrssyfspnfslsqrrslfqgiglssdrsattllnfqtgntNPSMNN-TLQAKQEMRDNSLDLTETSIEESLSRKRR 243
                               5556667778888888889889999999987766666666666653222222.33333333333466666555555555443 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036344.5E-4582255IPR005333Transcription factor, TCP
PROSITE profilePS5136927.50584138IPR017887Transcription factor TCP subgroup
Sequence ? help Back to Top
Protein Sequence    Length: 398 aa     Download sequence    Send to blast
MDGGGDDHFH HQHQHHHQYC QNNFPFQLLE KKEDEPCSSS SAAANNYPSL AISPSDHTNT  60
NPNNHNTLQI TETSKKPPPK RTSTKDRHTK VDGRGRRIRM PALCAARVFQ LTRELGHKSD  120
GETIEWLLQQ AEPSVIAATG TGTIPANFTS LNISLRSSGS SMSVPSQLRS SYFSPNFSLS  180
QRRSLFQGIG LSSDRSATTL LNFQTGNTNP SMNNTLQAKQ EMRDNSLDLT ETSIEESLSR  240
KRRQDVDLQQ QQQQQHDQQQ QMGSYLLQSS TGSMTASHSS IPANFWMLTN NNSQVLGGDP  300
IWTFPSVSNS AATLYRSTMS SGLHFMNFPA PMALLPTQQL GTSLVGNSSG TSLNEGQLGM  360
VTGLNPYRQC SGVSESQASG SHSHHGGGDD RNDTTSHH
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1238243SRKRRQ
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016472329.10.0PREDICTED: transcription factor TCP14-like
SwissprotQ93Z004e-68TCP14_ARATH; Transcription factor TCP14
TrEMBLM1D6K80.0M1D6K8_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000831480.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA28822351
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G47620.16e-55TEOSINTE BRANCHED, cycloidea and PCF (TCP) 14