PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

Plant Transcription Factor Database

v4.0

Previous version: v3.0

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Niben101Scf08724g06011.1

Organism

Nicotiana benthamiana

Taxonomic ID

4100

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

TCP

Protein Properties

Length: 398aa MW: 43596.8 Da PI: 7.3562

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Niben101Scf08724g06011.1	genome	BTI	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	127.6	1.3e-39	78	243	2	124
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasns 85 ++k+++++++hTkv+gR+RR+R++a+caar+F+L++eLG+++d++tieWLlqqa+p+++++tgt++++a+++ + s +ss+s+ Niben101Scf08724g06011.1 78 PPKRTSTKDRHTKVDGRGRRIRMPALCAARVFQLTRELGHKSDGETIEWLLQQAEPSVIAATGTGTIPANFTsLNISLRSSGSSM 162 789******************************************************************9998777777777755 PP TCP 86 ssg...........................................kaaksaakskksqksaasalnlakesrakararare 124 s + + + ++ + + +q+ + l+l + s +++ +r+r Niben101Scf08724g06011.1 163 SVPsqlrssyfspnfslsqrrslfqgiglssdrsattllnfqtgntNPSMNN-TLQAKQEMRDNSLDLTETSIEESLSRKRR 243 5556667778888888889889999999987766666666666653222222.33333333333466666555555555443 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	4.5E-45	82	255	IPR005333	Transcription factor, TCP
PROSITE profile	PS51369	27.505	84	138	IPR017887	Transcription factor TCP subgroup

Sequence ? help Back to Top
Protein Sequence Length: 398 aa Download sequence Send to blast
MDGGGDDHFH HQHQHHHQYC QNNFPFQLLE KKEDEPCSSS SAAANNYPSL AISPSDHTNT 60 NPNNHNTLQI TETSKKPPPK RTSTKDRHTK VDGRGRRIRM PALCAARVFQ LTRELGHKSD 120 GETIEWLLQQ AEPSVIAATG TGTIPANFTS LNISLRSSGS SMSVPSQLRS SYFSPNFSLS 180 QRRSLFQGIG LSSDRSATTL LNFQTGNTNP SMNNTLQAKQ EMRDNSLDLT ETSIEESLSR 240 KRRQDVDLQQ QQQQQHDQQQ QMGSYLLQSS TGSMTASHSS IPANFWMLTN NNSQVLGGDP 300 IWTFPSVSNS AATLYRSTMS SGLHFMNFPA PMALLPTQQL GTSLVGNSSG TSLNEGQLGM 360 VTGLNPYRQC SGVSESQASG SHSHHGGGDD RNDTTSHH

Sequence ? help Back to Top

Protein Sequence Length: 398 aa Download sequence Send to blast

MDGGGDDHFH HQHQHHHQYC QNNFPFQLLE KKEDEPCSSS SAAANNYPSL AISPSDHTNT  60
NPNNHNTLQI TETSKKPPPK RTSTKDRHTK VDGRGRRIRM PALCAARVFQ LTRELGHKSD  120
GETIEWLLQQ AEPSVIAATG TGTIPANFTS LNISLRSSGS SMSVPSQLRS SYFSPNFSLS  180
QRRSLFQGIG LSSDRSATTL LNFQTGNTNP SMNNTLQAKQ EMRDNSLDLT ETSIEESLSR  240
KRRQDVDLQQ QQQQQHDQQQ QMGSYLLQSS TGSMTASHSS IPANFWMLTN NNSQVLGGDP  300
IWTFPSVSNS AATLYRSTMS SGLHFMNFPA PMALLPTQQL GTSLVGNSSG TSLNEGQLGM  360
VTGLNPYRQC SGVSESQASG SHSHHGGGDD RNDTTSHH

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	238	243	SRKRRQ

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016472329.1	0.0	PREDICTED: transcription factor TCP14-like
Swissprot	Q93Z00	4e-68	TCP14_ARATH; Transcription factor TCP14
TrEMBL	M1D6K8	0.0	M1D6K8_SOLTU; Uncharacterized protein
STRING	PGSC0003DMT400083148	0.0	(Solanum tuberosum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA2882	23	51

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G47620.1	6e-55	TEOSINTE BRANCHED, cycloidea and PCF (TCP) 14